Hypotheses of relationships are critical to describing and understanding patterns of evolution within groups of organisms. But rarely has a comparative, historical approach been employed to study developmental change, particularly among anurans. A recent resurgence of interest in collecting basic ontogenetic information provides us with the opportunity to compare ontogenetic trajectories in a phylogenetic framework. Larval skeletons and osteological development were examined for 22 taxa and compared to two hypotheses of relationships—that of Cannatella, and one proposed herein based on 41 morphological characters from larvae and 62 from adults. Larval characters were mapped on the alternate cladograms using the ACCTRAN optimization criterion. Several larval features are highly conserved among some anurans, suggesting that there is some level of canalization of morphology early in ontogeny. In contrast, a number of morphologies vary among groups, supporting the fact that there have been major evolutionary modifications to anuran larval morphologies early in ontogeny and in the early evolutionary history of anurans.